Refactor assessment module and update dependencies; remove unused extractor and graph loader files

pyproject.toml

@@ -11,51 +11,34 @@ requires-python = ">=3.13"
 dependencies = [
     "langchain>=0.1.0",
     "langchain-openai>=0.1.0",
-    "langgraph",
-    "neo4j",
     "qdrant-client",
-    "pydantic",
-    "openai",
     "pydantic-settings>=2.12.0",
+    "PyYAML>=6.0.1",
+    "langgraph>=1.0.5",
+    "openai>=2.14.0",
+    "pydantic>=2.12.5",
+    "beanie>=2.0.1",
+    "motor>=3.7.1",
+    "neo4j>=5.19.0",
 ]
 
 [tool.hatch.build.targets.wheel]
 packages = ["src/helia"]
 
 [dependency-groups]
-dev = [
-    "ruff>=0.14.7",
-    "pyrefly>=0.43.1",
-]
+dev = ["ruff>=0.14.10", "pyrefly>=0.46.0"]
 
 [tool.ruff]
 line-length = 100
 target-version = "py314"
 
 [tool.ruff.lint]
-extend-select = [
-    "F",   # Pyflakes rules
-    "W",   # PyCodeStyle warnings
-    "E",   # PyCodeStyle errors
-    "I",   # Sort imports properly
-    "UP",  # Warn if certain things can changed due to newer Python versions
-    "C4",  # Catch incorrect use of comprehensions, dict, list, etc
-    "FA",  # Enforce from __future__ import annotations
-    "ISC", # Good use of string concatenation
-    "ICN", # Use common import conventions
-    "RET", # Good return practices
-    "SIM", # Common simplification rules
-    "TID", # Some good import practices
-    "TC",  # Enforce importing certain types in a TYPE_CHECKING block
-    "PTH", # Use pathlib instead of os.path
-    "TD",  # Be diligent with TODO comments
-    "NPY", # Numpy-specific rules
-    "COM", # enforce trailing comma rules
-    "DTZ", # require strict timezone manipulation with datetime
-    "FBT", # detect boolean traps
-    "N",   # enforce naming conventions, e.g. ClassName vs function_name
-]
-ignore = ["E501", "COM812", "TD003"]
+select = ["ALL"]
+ignore = ["D", "BLE", "EM101", "EM102", "E501", "COM812", "TD003", "TRY003"]
+
+[tool.ruff.lint.pydocstyle]
+# https://github.com/google/styleguide/blob/gh-pages/pyguide.md#38-comments-and-docstrings
+convention = "google"
 
 [tool.pyrefly]
 search-path = ["src"]